e. coli

Machine Learning-Driven Risk Ranking Framework for Virulence & Resistance Traits: An E. coli Case Study

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General Data

 

Member of UL

Veterinary Faculty

 

Status

partner  

Name of the leading partner

   

Project code/ Project No.

   

Project Title

Machine Learning-Driven Risk Ranking Framework for Virulence & Resistance Traits: An E. coli Case Study  

Financier

Evropska agencija za varnost hrane (EFSA)  

Project period

29.04.2026–28.10.2027  

Yearly sum of FTE

11.000,00 EUR

 

Leader

Bojan Papić  

Scientific field

Microbiology  

Partners

University of Ljubljana, Veterinary Faculty, Slovenia
Technological University Dublin (TU Dublin), Ireland
Polytechnic University of Cartagena (UPCT), Spain
Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna (IZSLER), Italy
 

 

Project Phases

Task 1. Literature review 
Task 2. Development of semi-quantitative risk scoring system
Task 3. Development of a curated WGS dataset 
Task 4. Validation of the predictive model
Task 5. User-friendly software application for risk ranking
Task 6. Assessing suitability of framework to enhance stakeholder collaboration

 

Project Description

"Machine Learning-Driven Risk Ranking Framework for Virulence & Resistance Traits: An E. coli Case Study" is an activity funded by the European Food Safety Authority (EFSA) through a Tailor-Made Activity (TMA) programme. Commenced in April 2026, the project will run for 18 months and brings together four partner institutions: Technological University Dublin as the lead coordinator and host institution of the principal investigator Dr Elena Alexa, Polytechnic University of Cartagena, University of Ljubljana and Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna. Using Escherichia coli as a case study, the project aims to develop an innovative methodology that integrates whole-genome sequencing (WGS) data, machine learning (ML) models, and multi-criteria decision analysis (MCDA) to enhance microbial risk assessment. 

 

Structure of the Project Group

  • Bojan Papić
  • Minja Stevanović